User Tools

Site Tools


inputfiles

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

inputfiles [2013/06/03 13:12]
mmarcet
inputfiles [2013/06/03 13:16] (current)
mmarcet
Line 19: Line 19:
   tree_in_newick_format   tree_in_newick_format
   ​   ​
-=== TreeKO'​s configuration file ===+==== TreeKO'​s configuration file ====
 Several parameters can be modified for treeKO to adapt better to the users particular needs. In order to change the default parameters, treeKO will need a configuration file that should be included in the command line with the **-c** option. \\ Several parameters can be modified for treeKO to adapt better to the users particular needs. In order to change the default parameters, treeKO will need a configuration file that should be included in the command line with the **-c** option. \\
   python treeKO.py -a tree_file_1 -b tree_file_2 -o output_file_name -c configuration_file   python treeKO.py -a tree_file_1 -b tree_file_2 -o output_file_name -c configuration_file
Line 25: Line 25:
  
 The configuration file can be used to change the rooting method, the orthology prediction method, printing information or to limit the number of pruned trees allowed during the use of TreeKO. Detailed information about the configuration file can be found [[configuration_file|here]]. The configuration file can be used to change the rooting method, the orthology prediction method, printing information or to limit the number of pruned trees allowed during the use of TreeKO. Detailed information about the configuration file can be found [[configuration_file|here]].
 +
 +----
 +
 +  * [[start|Starting page]]
 +  * [[documentation|How to run treeKO]]
 +  * [[Algorithm|Algorithm]]
 +  * [[output | Output Files]]
 +  * [[configuration_file | Configuration File]]
 +  * [[downloads|Downloads]]
 +  * [[about | About]]
inputfiles.1370257942.txt.gz ยท Last modified: 2013/06/03 13:12 by mmarcet