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| - | Welcome to TreeKo webpage! | + | =====TreeKo===== |
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| + | Comparisons between tree topologies provide important information for many evolutionary studies. TreeKo is a method that allows the **comparison of any two tree topologies**, even those with missing leaves and duplications. This is important in **genome-wide analysis** since many trees do not have exact leaf pairings and therefore most tree comparison methods are rendered useless. | ||
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| + | In order to calculate the distance between two trees that contain duplications, **treeKo first prunes the trees** so that you obtain a list of trees that only contain one-to-one orthologs. Each collection of pruned trees is then compared to the other and two distances are calculated depending on whether the presence of duplication and loss events are considered a difference or not. | ||
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| + | ---- | ||
| + | * [[documentation|How to run treeKO]] | ||
| + | * [[Algorithm|Algorithm]] | ||
| + | * [[inputfiles|Input Files]] | ||
| + | * [[output | Output Files]] | ||
| + | * [[configuration_file | Configuration File]] | ||
| + | * [[downloads|Downloads]] | ||
| + | * [[about | About]] | ||
start.1370255856.txt.gz · Last modified: 2013/06/03 12:37 by mmarcet
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