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documentation [2013/06/03 13:03]
mmarcet
documentation [2013/06/03 13:15] (current)
mmarcet
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 //All the files downloaded in the treeKO package need to be in the same directory for the program to work//\\ //All the files downloaded in the treeKO package need to be in the same directory for the program to work//\\
 To run treeKO on default parameters a program needs to be chosen using the **-p** option:​\\  ​ To run treeKO on default parameters a program needs to be chosen using the **-p** option:​\\  ​
-\\ Subtree reconstruction ​(**st**)\\ [[algorithm_tc|Tree comparison]] (**tc**)\\ [[algorithm#​phylome_support_algorithm|Phylome support]] (**ps**) \\ [[algorithm#​reconciliation_distance|Reconciliation distance]] (**rd**)+\\ [[algorithm#​reconstruction_of_pruned_trees|Reconstruction of pruned trees]] ​(**st**)\\ [[algorithm#​tree_comparison_algorithm|Tree comparison]] (**tc**)\\ [[algorithm#​phylome_support_algorithm|Phylome support]] (**ps**) \\ [[algorithm#​reconciliation_distance|Reconciliation distance]] (**rd**)
  
 **Tree comparison:​**\\ **Tree comparison:​**\\
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   python treeKO.py -a species_tree_file -l list_trees -p ps -o statistics_outfile -t species_tree_outfile.pdf -n species_tree_newick_outfile   python treeKO.py -a species_tree_file -l list_trees -p ps -o statistics_outfile -t species_tree_outfile.pdf -n species_tree_newick_outfile
 +
 +
 +----
 +
 +  * [[start|Starting page]]
 +  * [[Algorithm|Algorithm]]
 +  * [[inputfiles|Input Files]]
 +  * [[output | Output Files]]
 +  * [[configuration_file | Configuration File]]
 +  * [[downloads|Downloads]]
 +  * [[about | About]]
   ​   ​
documentation.1370257399.txt.gz ยท Last modified: 2013/06/03 13:03 by mmarcet